Convert a data frame containing sourmash gather results into a upset plot compatible data frame

`from_gather_to_upset_df()` converts a data frame like that produced by `read_gather()` into a named list of vectors. Each vector in the list is named by the query_name column in the input data frame and contains the genome accessions found in that sample. The `query_name` column is used for sample names. The returned data frame will have the genome accessions as row names and the query_names column names and can be plotted with `UpSetR::upset()` or `ComplexUpset::upset()`. If plotting with Complex Upset, additional metadata can be added to the data frame (and therefore the plot) by joining on the values of the genome_accession rownames.

Usage

from_gather_to_upset_df(gather_df)

Arguments

gather_df

A data frame of multiple sourmash gather results created by `read_gather()`.

Value

An upset plot compliant data frame

Examples

if (FALSE) {
from_gather_to_upset_df(gather_df)
}