Transform the output of sourmash taxonomy annotate into a phyloseq OTU table (count table)

Transform the output of sourmash taxonomy annotate into a phyloseq OTU table (count table)

Usage

from_taxonomy_annotate_to_count_table(taxonomy_annotate_df)

Arguments

taxonomy_annotate_df

Data frame containing outputs from sourmash taxonomy annotate.

Value

A phyloseq otu_table object

Examples

if (FALSE) {
from_taxonomy_annotate_to_count_table(taxonomy_annotate_df)
}