Read CSV file or files output by sourmash gather

`read_gather()` reads in one or many CSV files produced by the command line function sourmash taxonomy annotate. Genome matches can be filtered with `intersect_bp_threshold`, whose default value is 0 base pairs.

Usage

read_gather(file, intersect_bp_threshold = 0, ...)

Arguments

file

Path to CSV file or files output by sourmash gather.

intersect_bp_threshold

Integer. Gather matches must have an intersect_bp greater than or equal to this value.

...

Arguments passed to read_csv().

Value

A tibble.

Examples

if (FALSE) {
read_gather()
}